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stefanradev93 / BayesFlow

A Python library for amortized Bayesian workflows using generative neural networks.
https://bayesflow.org/
MIT License
286 stars 45 forks source link

Adding a small tutorial how to use SBML models with BayesFlow #146

Open arrjon opened 4 months ago

arrjon commented 4 months ago

I have included a brief tutorial on how to utilize an SBML model with BayesFlow (the SBML format is very often used in computational systems biology). In the other tutoirals, users need to define and simulate the model manually. However, in this tutorial, we demonstrate the process of loading a model from the BioModels database, utilizing a simulator designed to handle SBML data format, and showcasing the seamless integration with BayesFlow. I hope you find it useful :)

stefanradev93 commented 4 months ago

That's fantastic, Jonas! Thanks!

When I try to view the notebook with the GitHub renderer, I get:

Invalid Notebook 'execution_count' is a required property Using nbformat v5.9.2 and nbconvert v7.16.1

I will try to open the notebook from my dev PC later.

arrjon commented 4 months ago

I just rerun the notebook and pushed it again. At least I can view it with the GitHub renderer