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stefpeschel / NetCoMi

Network construction, analysis, and comparison for microbial compositional data
GNU General Public License v3.0
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Colored by phylum #107

Closed estebannieto93 closed 6 months ago

estebannieto93 commented 7 months ago

Hello,

I am trying to color the nodes by phylum as in the tutorial. But when I tried to do it the following error appeared

all(colnames(adja1) %in% names(featVecCol)) is not TRUE

but then I run separatly this comand : all(colnames(net_cclasso_genus$adja1) %in% names(phyla)) and the result was TRUE.

Do you know how to solve this problem?

stefpeschel commented 7 months ago

Hey, Does the error also occur if you run the tutorial or only with your data set? Please make sure that your count matrix has row and column names, and that the names of the phyla vector matches the taxa names. If this is the case, could you please send me a small reproducible example via email? Can be a really small subset of your data or any other data that causes the error. And of course the code you used for generating the network. This would be helpful to solve the issue. Thanks!

estebannieto93 commented 7 months ago

I could solve it. It was an error in the matrix.

Thanks!