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stefpeschel / NetCoMi

Network construction, analysis, and comparison for microbial compositional data
GNU General Public License v3.0
146 stars 26 forks source link

cran/bioconductor? #19

Closed nick-youngblut closed 3 years ago

nick-youngblut commented 3 years ago

While this benchmark isn't currently attained by similar software (e.g., https://github.com/zdk123/SpiecEasi/issues/90), are you planning on publishing NetCoMi on CRAN/Bioconductor? Conda would also be great, as done for SpiecEasi

stefpeschel commented 3 years ago

Hey Nick, Thanks for your suggestion! Publishing NetCoMi on one or more of these platforms is planned at some point but not in the near future. Best, Stefanie

adrientaudiere commented 5 months ago

Hi @stefpeschel, Is submission to CRAN still on the agenda? I can help a little with this. I develop and maintain the MiscMetabar package, and your package may add very useful insight into my metabarcoding analysis.

Best, Adrien

stefpeschel commented 5 months ago

Hi Adrien, Thanks for the offer. Submission to CRAN is not planned. Maybe, NetCoMi will be sent to Bioconductor at some point. However, it currently doesn't make much sense since two of the main dependencies (SpiecEasi and SPRING) are only available on GitHub.

adrientaudiere commented 5 months ago

Thanks for your prompt answer. That makes sense.