stefpeschel / NetCoMi

Network construction, analysis, and comparison for microbial compositional data
GNU General Public License v3.0
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Hierarchical cluster validation, is it possible? #55

Closed MinLuke closed 2 years ago

MinLuke commented 2 years ago

Hello everyone, When performing netAnalyze() using clustMethod="hierachical" is there a way to statistically validate the cluster subdivision within the network, such as a correspondent of permanova for PCA for example? Thank you all Lucy

stefpeschel commented 2 years ago

Hey Lucy For hierarchical clustering, the functions hclust and cutree from stats package are used within netAnalyze() (note that they are applied to the dissimilarity matrix). Further functionality is not implemented and would need to be done outside NetCoMi. Best, Stefanie

MinLuke commented 2 years ago

Thanks a lot Stefanie for the support