stefpeschel / NetCoMi

Network construction, analysis, and comparison for microbial compositional data
https://netcomi.de
GNU General Public License v3.0
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Installation ERROR: dependency 'SPRING' is not available for package 'NetCoMi' #8

Closed kafker closed 3 years ago

kafker commented 4 years ago

Hello,

I am getting the following error while trying to install NetCoMi. Seems to be a problem related with the dependency SPRING. So, I have installed SPRING: https://github.com/jchiquet/spring, but NetCoMi installation still fail.

Thank you!

> devtools::install_github("stefpeschel/NetCoMi", dependencies = TRUE,
+                          repos = c("https://cloud.r-project.org/",
+                                    BiocManager::repositories()))
Downloading GitHub repo stefpeschel/NetCoMi@HEAD
√  checking for file 'C:\Users\user\AppData\Local\Temp\RtmpYNlaoT\remotesc5043d511f5\stefpeschel-NetCoMi-fe3bd76/DESCRIPTION' ... 
-  preparing 'NetCoMi': (384ms)
√  checking DESCRIPTION meta-information ... 
-  cleaning src
-  installing the package to process help pages
         -----------------------------------
   ERROR: dependency 'SPRING' is not available for package 'NetCoMi'
-  removing 'C:/Users/user/AppData/Local/Temp/RtmpiCjVn3/Rinstf6c38b2d39/NetCoMi'
         -----------------------------------
   ERROR: package installation failed
Error: Failed to install 'NetCoMi' from GitHub:
  System command 'Rcmd.exe' failed, exit status: 1, stdout + stderr:
E> * checking for file 'C:\Users\user\AppData\Local\Temp\RtmpYNlaoT\remotesc5043d511f5\stefpeschel-NetCoMi-fe3bd76/DESCRIPTION' ... OK
E> * preparing 'NetCoMi':
E> * checking DESCRIPTION meta-information ... OK
E> * cleaning src
E> * installing the package to process help pages
E>       -----------------------------------
E> ERROR: dependency 'SPRING' is not available for package 'NetCoMi'
E> * removing 'C:/Users/user/AppData/Local/Temp/RtmpiCjVn3/Rinstf6c38b2d39/NetCoMi'
E>       -----------------------------------
E> ERROR: package installation failed
muellsen commented 4 years ago

Hej, the correct SPRING package can be found here: https://github.com/GraceYoon/SPRING Sorry for the name confusion

kafker commented 4 years ago

Christian, Thank you!