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stefpeschel / NetCoMi

Network construction, analysis, and comparison for microbial compositional data
GNU General Public License v3.0
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Sequences on the network plot instead of taxa #88

Closed MicrobEva closed 1 year ago

MicrobEva commented 1 year ago

Hello, I am currently trying to build a microbiome network with my data from a phyloseq object, I have an issue with the labelScale option. Indeed, when labelScale = FALSE as suggested in the pipeline, sequences are appearing on the plot instead of their taxonomic assignment. I suggest that it comes from labelScale because when I select it as TRUE, the sequences are not plotted anymore, but it could definitely comes from somewhere else. Is there a way to fix it please? And thus, which one?

stefpeschel commented 1 year ago

Hey,

When labelScale is set to TRUE, the labels are scaled based on the node size, which usually works well. Would you please send me the code you used for creating the plot so I can try to reproduce your issue?

Do you finally want to use the sequence/ASV names or the taxonomic assignments as node labels?

MicrobEva commented 1 year ago

Hey, Thanks for your answer, I finally found that my problem was from my data. So I fixed it and it is working well now!

stefpeschel commented 1 year ago

Okay great. Glad to hear it's working now!