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steineggerlab / conterminator

Detection of incorrectly labeled sequences across kingdoms
GNU General Public License v3.0
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The result of "$taxidmapping" is: BL_ORD_ID:0 0 and etc. #22

Open maruiqi0710 opened 1 year ago

maruiqi0710 commented 1 year ago

I donwload nt from ftp.ncbi.nlm.nih.gov:/blast/db/FASTA/nt.gz. Then, make db using:

makeblastdb -in ./nt -dbtype nucl -out ./nt_blast_db

Then, run

"$blastdbcmd" -db "$db" -entry all -outfmt "%a %T" > "$taxidmapping"

The result of "$taxidmapping" is:

BL_ORD_ID:0 0 BL_ORD_ID:1 0 BL_ORD_ID:2 0 BL_ORD_ID:3 0 ………………

What's wrong?