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steineggerlab / foldcomp

Compressing protein structures effectively with torsion angles
GNU General Public License v3.0
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using foldcomp database with a foldseek search #38

Open emzodls opened 1 year ago

emzodls commented 1 year ago

I'm trying to use a foldcomp database (esmatlas_v2023_02) for a foldseek search. I downloaded following the instructions, when I try to use easy-search though I get this error:

Input database "foldcomp_DB/esmatlas_v2023_02" has the wrong type (Generic) Allowed input:

Am I missing a step? Do I need to decompress the database and convert it to pdb files first?

Thanks,

Emzo

khb7840 commented 1 year ago

Please try foldseek createdb for foldcomp database and run foldseek on the generated foldseek database. Also, check that v2023_02 is a partial update from initial release to 02/2023. If you want the whole esmatlas, please use esmatlas