This is a great work and I would like to have a feature request (or please let me know how to do this if already possible).
Sometimes I do my own alignemnts, and would only like to have the MSA, based on those, without realigning. Would it be possible to input a bunch of prea-ligned structures and get the MSA? Surprisingly, no similar tools provides this feature.
My actual use-case is having protein interactions, aligned to one of the monomers which are homologues. I want to extract an alignment for the other partner of the interactions (peptides). I could do the alignment, save only the peptides' structure and input it to foldmason to get an MSA easily.
Hi,
This is a great work and I would like to have a feature request (or please let me know how to do this if already possible).
Sometimes I do my own alignemnts, and would only like to have the MSA, based on those, without realigning. Would it be possible to input a bunch of prea-ligned structures and get the MSA? Surprisingly, no similar tools provides this feature.
My actual use-case is having protein interactions, aligned to one of the monomers which are homologues. I want to extract an alignment for the other partner of the interactions (peptides). I could do the alignment, save only the peptides' structure and input it to foldmason to get an MSA easily.
Thank you very much!