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steineggerlab / foldmason

Multiple Protein Structure Alignment at Scale with FoldMason
https://search.foldseek.com/foldmason
GNU General Public License v3.0
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need a demo input file for test #8

Open orangeSi opened 2 weeks ago

orangeSi commented 2 weeks ago

Expected Behavior

provide a demo input file for foldmason to test it.

Current Behavior

have no a demo input file for foldmason to test it. https://search.foldseek.com/foldmason had demo output instead of demo input.

Thanks! Si

gamcil commented 2 weeks ago

Hi Si, are you wanting example structures to use on the webserver itself, or locally? Currently we use the example structures from Foldseek for local demos (https://github.com/steineggerlab/foldmason/tree/main/lib/foldseek/example, available in Foldmason as e.g. ./lib/foldseek/example/d*), but we could definitely make that clearer on the repository/server.

orangeSi commented 2 weeks ago

Thanks, gamcil~ I upload https://github.com/steineggerlab/foldmason/blob/main/lib/foldseek/example/1tim.pdb.gz (have two chain) to foldmason web server as input, it works well~ And if add this pdb file path to README.md as demo input will make more clear for new user like me ~

And I also want to know whether https://search.foldseek.com/foldmason support upload more than one pdb files as input instead of only one pdb file(had more than one chains)? because I upload multiple pdb files, but https://search.foldseek.com/foldmason only keep one file.

Thanks！ Si