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steineggerlab / foldseek

Foldseek enables fast and sensitive comparisons of large structure sets.
https://foldseek.com
GNU General Public License v3.0
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python version code #106

Closed ManlioWu closed 1 year ago

ManlioWu commented 1 year ago

Hello! Could you provide the code of foldseek with python? Thanks!

ManlioWu commented 1 year ago

I want to train your model on other protein data, but cpp version code is diffcult for me. I'd appreciate it if you could provide the python one if you have it. Thanks a lot.

martin-steinegger commented 1 year ago

@ManlioWu I am not 100% sure what exactly you require, but our Python-based training code for the VQ-VAE is available here.

ManlioWu commented 1 year ago

@ManlioWu I am not 100% sure what exactly you require, but our Python-based training code for the VQ-VAE is available here.

This is what I need. Thank you very much!