compilation fails under gcc 13

[joelb123]

Expected Behavior

Compilation completes without error under gcc 13.1.1 (patch 20230527).

Current Behavior

Steps to Reproduce (for bugs)

Usual cmake and make/ninja.

Context

Works under gcc 12.3. For gcc>12, definitions of many standard integer types has moved to , so roughly 129 files throw errors of the type error: ‘uint64_t’ does not name a type.

Your Environment

Include as many relevant details about the environment you experienced the bug in.

• Git commit used: current head
• Compiler and Cmake versions used: gcc 13, cmake 3.27.0, glibc 2.37
• Server specifications: Intel Core I5-13600K
• Operating system and version: Gentoo, up to date.

[milot-mirdita]

We had the following PR that should have fixed most of these issues: https://github.com/soedinglab/MMseqs2/pull/714

I can't reproduce the build failure with neither Conda's GCC 13.1.0 or a fresh docker image with debian unstable (GCC 13.2).

Could you check if this was indeed the latest Foldseek head? Maybe we fixed the issue by accident in the meantime.

[joelb123]

I built it from head yesterday under gcc 13.2 without problems, so you must have fixed it.

Thank you.