Open linda5mith opened 8 months ago
Forgive me if this is a silly question but in the documentation it says "important cluster parameters": --alignment-type ...
However when I try to specify --alignment-type using easy-cluster I get:
Unrecognized parameter "--alignment-type". Did you mean "--alignment-mode" (Alignment mode)?
Command I'm running: foldseek easy-cluster -c 0.9 ../pdbs_to_TM_align/ res tmp --alignment-type 1
foldseek easy-cluster -c 0.9 ../pdbs_to_TM_align/ res tmp --alignment-type 1
I'm trying to cluster my pdbs using TM-align (--alignment-type 1). Am I missing something?
Many thanks!
@linda5mith we did not implement --alignment-type in the clustering workflow. However, you can apply --tmscore-threshold to apply TMscore.
--alignment-type
--tmscore-threshold
Forgive me if this is a silly question but in the documentation it says "important cluster parameters": --alignment-type ...
However when I try to specify --alignment-type using easy-cluster I get:
Unrecognized parameter "--alignment-type". Did you mean "--alignment-mode" (Alignment mode)?
Command I'm running:
foldseek easy-cluster -c 0.9 ../pdbs_to_TM_align/ res tmp --alignment-type 1
I'm trying to cluster my pdbs using TM-align (--alignment-type 1). Am I missing something?
Many thanks!