steineggerlab / foldseek

Foldseek enables fast and sensitive comparisons of large structure sets.
https://foldseek.com
GNU General Public License v3.0
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Closest neighbour to virtual centre #213

Open genomeboy opened 10 months ago

genomeboy commented 10 months ago

Is it possible, when creating or dumping data from a database to export, for each amino acid/3Di token in a structure, the coordinate (site number) of the amino acid that was selected as the closest neighbour to the "virtual centre".

If not it would be great if this info could be dumped, along with the 3Di string and descriptor values with (for example) the "structureto3didescriptor" command.

Many thanks for any feedback and thanks for the cool software.