steineggerlab / foldseek

Foldseek enables fast and sensitive comparisons of large structure sets.
https://foldseek.com
GNU General Public License v3.0
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Get the Latent representations only #219

Closed daniel-dpq closed 7 months ago

daniel-dpq commented 9 months ago

Thanks for your great work.

I wonder if there is an easy way to get only the latent representations of a structure.

milot-mirdita commented 9 months ago

You can find our use to train 3Di at: https://github.com/steineggerlab/foldseek-analysis

A community member has extracted the 3Di code into a python module here: https://github.com/althonos/mini3di