Open jov131 opened 6 months ago
The output 'ttmscore, alntmscore' seems always the same in my dataset.
query target qlen tlen alnlen qtmscore ttmscore alntmscore test3 test3 374 374 374 1.000E+00 1.000E+00 1.000E+00 test3 test7 374 385 161 1.909E-01 1.859E-01 1.859E-01 test3 test2 374 421 307 1.509E-01 1.361E-01 1.361E-01 test3 test5 374 111 58 5.909E-02 1.856E-01 1.856E-01 test3 test6 374 555 106 1.389E-01 9.837E-02 9.837E-02 test5 test5 111 111 111 1.000E+00 1.000E+00 1.000E+00 test5 test3 111 374 58 1.856E-01 5.909E-02 5.909E-02 test5 test6 111 555 25 1.638E-01 3.892E-02 3.892E-02 test5 test1 111 186 21 8.786E-02 6.173E-02 6.173E-02 test2 test2 421 421 421 1.000E+00 1.000E+00 1.000E+00 test2 test6 421 555 94 1.697E-01 1.313E-01 1.313E-01 test2 test1 421 186 107 1.132E-01 2.453E-01 2.453E-01 test2 test4 421 385 31 7.175E-02 7.833E-02 7.833E-02 test2 test3 421 374 104 1.325E-01 1.471E-01 1.471E-01 test2 test7 421 385 62 1.105E-01 1.200E-01 1.200E-01 test2 test5 421 111 91 4.794E-02 1.266E-01 1.266E-01 test6 test6 555 555 555 1.000E+00 1.000E+00 1.000E+00 test6 test2 555 421 94 1.313E-01 1.697E-01 1.697E-01 test6 test1 555 186 54 8.732E-02 2.518E-01 2.518E-01 test6 test7 555 385 92 1.030E-01 1.431E-01 1.431E-01 test6 test4 555 385 48 7.624E-02 1.070E-01 1.070E-01 test6 test3 555 374 127 9.940E-02 1.399E-01 1.399E-01 test6 test5 555 111 19 3.221E-02 1.580E-01 1.580E-01 test7 test7 385 385 385 1.000E+00 1.000E+00 1.000E+00 test7 test3 385 374 160 1.849E-01 1.899E-01 1.899E-01 test7 test6 385 555 150 7.445E-02 5.358E-02 5.358E-02 test7 test4 385 385 203 7.652E-02 7.652E-02 7.652E-02 test7 test2 385 421 234 1.045E-01 9.876E-02 9.876E-02 test7 test1 385 186 164 6.405E-02 9.706E-02 9.706E-02 test7 test5 385 111 28 6.846E-02 2.200E-01 2.200E-01 test1 test1 186 186 186 1.000E+00 1.000E+00 1.000E+00 test1 test2 186 421 173 2.451E-01 1.132E-01 1.132E-01 test1 test6 186 555 54 2.518E-01 8.732E-02 8.732E-02 test1 test4 186 385 36 1.848E-01 9.085E-02 9.085E-02 test1 test3 186 374 48 6.865E-02 3.691E-02 3.691E-02 test1 test7 186 385 68 1.789E-01 9.483E-02 9.483E-02 test4 test4 385 385 385 1.000E+00 1.000E+00 1.000E+00 test4 test1 385 186 36 9.085E-02 1.848E-01 1.848E-01 test4 test6 385 555 39 9.821E-02 6.859E-02 6.859E-02 test4 test2 385 421 36 9.087E-02 8.324E-02 8.324E-02 test4 test7 385 385 302 1.086E-01 1.086E-01 1.086E-01 test4 test3 385 374 308 1.013E-01 1.039E-01 1.039E-01
I think the probability that TMscore is identical when normalized by alnLen or by tLen is extremely low. I wonder whether there is some bugs or my understanding to TMscore is incorrect.
The output 'ttmscore, alntmscore' seems always the same in my dataset.
I think the probability that TMscore is identical when normalized by alnLen or by tLen is extremely low. I wonder whether there is some bugs or my understanding to TMscore is incorrect.