steineggerlab / foldseek

Foldseek enables fast and sensitive comparisons of large structure sets.
https://foldseek.com
GNU General Public License v3.0
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python3 API #222

Open AntoniaFeilden opened 6 months ago

AntoniaFeilden commented 6 months ago

Expected Behavior

Documentation available for foldseek API

Current Behavior

Documentation is exclusively for MMSeqs2. The input data (e.g pdb) and output data are different formats to that of MMSeqs2: https://github.com/soedinglab/MMseqs2-App/blob/master/docs/api_example.py

Steps to Reproduce (for bugs)

Please make sure to execute the reproduction steps with newly recreated and empty tmp folders. N/A

Foldseek Output (for bugs)

Please make sure to also post the complete output of Spacepharer. You can use gist.github.com for large output. N/A

Context

Providing context helps us come up with a solution and improve our documentation for the future. I am new to API (curl and request module in python).

Your Environment

Include as many relevant details about the environment you experienced the bug in.

martin-steinegger commented 5 months ago

@milot-mirdita could you help with this?