Maybe the sequences length is less than 14 residues.

Expected Behavior

easy-cluster a pdb file in a databases PDB100. Shows no k-mer could be extracted. Error: Prefilter step 0 died and Search died.

Current Behavior

Steps to Reproduce (for bugs)

Please make sure to execute the reproduction steps with newly recreated and empty tmp folders. Shows no k-mer could be extracted. Error: Prefilter step 0 died and Search died.

Foldssek Output (for bugs)

Please make sure to also post the complete output of Spacepharer. You can use gist.github.com for large output.

Context

Providing context helps us come up with a solution and improve our documentation for the future.

Your Environment

Include as many relevant details about the environment you experienced the bug in.

Git commit used (The string after "MMseqs Version:" when you execute foldseek without any parameters):
Which foldseek version was used (Statically-compiled, self-compiled, Conda, etc.):
For self-compiled and Homebrew: Compiler and Cmake versions used and their invocation:
Server specifications (especially CPU support for AVX2/SSE and amount of system memory):
Operating system and version: linux

steineggerlab / foldseek