search

steineggerlab / foldseek

Foldseek enables fast and sensitive comparisons of large structure sets.
https://foldseek.com
GNU General Public License v3.0
780 stars 99 forks source link

Easy search: how do I output both sequence similarity and structure-sequence/3Di similarity? #230

Open danny305 opened 8 months ago

danny305 commented 8 months ago

When you run easy search and output the pident/fident columns, is this sequence similarity (what you would get from mmseqs2/blast) or structure-sequence similarity (using the 3Di)?

Also, how can I output both sequence and structure-sequence similarity?

Thank you!!

Danny

martin-steinegger commented 8 months ago

It is the amino acid similarity. Currently, we do not support to print out both.