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steineggerlab / foldseek

Foldseek enables fast and sensitive comparisons of large structure sets.
https://foldseek.com
GNU General Public License v3.0
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3di for multi-chain protein #262

Closed Zhu-Siqi closed 2 months ago

Zhu-Siqi commented 2 months ago

Hi, I want to transform my multi-chain protein to 3di token sequence. When encoding the protein, I wonder whether the 3di tokens are encoded based on the atom coordinates of all chains or just one single chain?

martin-steinegger commented 2 months ago

it is encoded based on the single chain

Zhu-Siqi commented 2 months ago

it is encoded based on the single chain

Thanks!