Job kept being stucked in the pending state

hdahoiowjeasc commented 2 months ago

Hi, my job has been stucked in the pending state and I have resubmiited the job for a few time but it didn't help. I ran a few jobs yesterday and everything went on well and the PDB file I submit today is very similar to those submitted yesterday. Don't know if there is a server deployment or something else. I would really appreciate for any replyment.

Expected Behavior

Current Behavior

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milot-mirdita commented 2 months ago

It might have fallen victim to the deployment steps for Foldseek-Multimer yesterday.

Can you try to change a single character somewhere and resubmit (e.g. some remark line or the last position of any X, Y, Z coordinate or something like that)?

It should make a new cache entry and work again.

If that doesn't work, could you please share the query that is broken?

hdahoiowjeasc commented 2 months ago

It might have fallen victim to the deployment steps for Foldseek-Multimer yesterday.

Can you try to change a single character somewhere and resubmit (e.g. some remark line or the last position of any X, Y, Z coordinate or something like that)?

It should make a new cache entry and work again.

If that doesn't work, could you please share the query that is broken?

I resubmited a job and it is still pending. Previously it should be finished within 1 or 2 min...The previous query id is LBU0UMEo0O6jQzZNkYKQXUr0uAsrbd7O1OC24A. And the resubmitted one is YbZ6VcKIHUFxOujn5BtzlLxyaCZQiqoAgOOe5g.

milot-mirdita commented 2 months ago

I found the issue, the AFDB-Proteome returns an empty result list, but that results in an error apparently.

You can leave that DB out for this query, and it should work again. I will try to fix the issue in the meantime.

hdahoiowjeasc commented 2 months ago

I found the issue, the AFDB-Proteome returns an empty result list, but that results in an error apparently.

I can leave that DB out for this query, and it should work again. I will try to fix the issue in the meantime.

Thank you for your help! I'll wait to see if job can succeed later when the database is left out. And would you please inform me if the problem is fixed?

milot-mirdita commented 2 months ago

I fixed the bug, you should be able to submit a new job now with the previously broken query. Thanks a lot!

hdahoiowjeasc commented 2 months ago

It worked! Thank you sooo much!

milot-mirdita commented 2 months ago

Thank you for reporting the issue =)

steineggerlab / foldseek