Open calebthomas259 opened 1 week ago
Hi, thanks for the amazing software!
Just a heads up. When I type foldseek cluster into the command line (version 9.427df8a), it says the default E-value is 0.01:
foldseek cluster
-e DOUBLE List matches below this E-value (range 0.0-inf) [1.000E-02]
When I type foldseek easy-cluster into the command line, I get a default value 10:
foldseek easy-cluster
-e DOUBLE List matches below this E-value (range 0.0-inf) [1.000E+01]
But in the readme.md cluster options, it says the default value is 0.001, which matches neither of the previous:
-e Sensitivity List matches below this E-value (range 0.0-inf, default: 0.001); increasing it reports more distant structures
There seem to be similar discrepancies for foldseek search/foldseek easy-search.
foldseek search
foldseek easy-search
Cheers!
Hi, thanks for the amazing software!
Just a heads up. When I type
foldseek cluster
into the command line (version 9.427df8a), it says the default E-value is 0.01:When I type
foldseek easy-cluster
into the command line, I get a default value 10:But in the readme.md cluster options, it says the default value is 0.001, which matches neither of the previous:
There seem to be similar discrepancies for
foldseek search
/foldseek easy-search
.Cheers!