I'm wondering if it's possible to get tmscores and other structural alignment values for 3Di sequences produced from prostt5/AA sequences instead of protein structures? Or if there's a different cause of this error?
Thanks in advance for your help!
Varada
Additionally, I get the following warning in my log (below) and was wondering how this impacts my results/how to solve it?
Cannot find query C-alpha or db C-alpha database
Disabling --sort-by-structure-bits
This impacts the final score and ranking of hits, but not E-values themselves. Ranking alterations primarily occur for E-values < 10^-1.
Hi there!
Thanks for this great tool - it is my first time using it (also beginner with protein structures)
I created by own prostT5 database from 345 AA seqs by doing this:
When I run:
I get the expected result of a tabular "blast like" file
However, I wanted to more informative parameters on my alignments but they all lead to different errors.
and if I run:
I'm wondering if it's possible to get tmscores and other structural alignment values for 3Di sequences produced from prostt5/AA sequences instead of protein structures? Or if there's a different cause of this error?
Thanks in advance for your help!
Varada
Additionally, I get the following warning in my log (below) and was wondering how this impacts my results/how to solve it?