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steineggerlab / ufcg

UFCG: Universal Fungal Core Genes
https://ufcg.steineggerlab.com
GNU General Public License v3.0
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Unable to install ufcg by conda #23

Closed jun-yeong-heo closed 9 months ago

jun-yeong-heo commented 10 months ago

I'd tried to install ufcg in conda environment following the install guideline. but I cannot able to install ufcg by conda install -y -c bioconda ufcg.

I've got the messages Solving environment: unsuccessful initial attempt using frozen solve. Retrying with flexible solve. and Solving environment: unsuccessful attempt using repodata from current_repodata.json, retrying with next repodata source., and then Collecting package metadata (repodata.json): goes to infinite.

so I've tried to build it from source, although the installation succeeds, but when run it, I've repeatedly got an error UFCG |: ERROR! Following dependency binary remains unsolved : fastBlockSearch.

How can I bypass all these errors? Any advice would be many appreciated.

endixk commented 9 months ago

Hello,

Seems like conda is struggling with resolving your environment due to the dependencies of our package. I recommend you to use libmamba-solver, which should resolve environment solving issues:

conda update -n base conda
conda install -n base conda-libmamba-solver
conda config --set solver libmamba

If this doesn't work, please notice that the manual installation requires dependent programs to be installed manually as well. Please visit this page and follow the links to the requirements (mmseqs, augustus, mafft and iqtree) to complete the manual installation.

jun-yeong-heo commented 9 months ago

Hello,

Thanks for your kind advice.

But unfortunately I could not install the package on my conda environment using libmamba-solver. I installed ufcg and the requirements manually and it works fine.

Thanks again.