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stemangiola / CuratedAtlasQueryR

Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
https://stemangiola.github.io/CuratedAtlasQueryR/
GNU General Public License v3.0
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cache for pseudobulk same as for single cell? #144

Open stemangiola opened 4 months ago

stemangiola commented 4 months ago

@myushen I noticed that if I query pseudobulk

my_metadata |>
     get_pseudobulk(assays = "counts")

the data is stored in the wrong cache?

Downloading https://object-store.rc.nectar.org.au/v1/AUTH_06d6e008e3e642da99d806ba3ea629c5/pseudobulk-0.1.0/original/GSE122960/se.rds to /Users/mangiola.s/Library/Caches/org.R-project.R/R/CuratedAtlasQueryR/0.2.1/original/GSE122960/se.rds

I think we should use pseudobulk-0.1.0 for the cache , not 0.2.1

myushen commented 4 months ago

good point. this is associated with the cache directory structure strategy implementation. we might need to think about if we want to adapt the same structure strategy as the future cloud. cellxgene

fibrosis

pseudobulk