stemangiola / rpharma2020_tidytranscriptomics

Other
10 stars 1 forks source link

sentence on identifying cell types from bulk rna-seq vs single-cell #26

Closed mblue9 closed 4 years ago

mblue9 commented 4 years ago

Was thinking that at the moment the workshop reads like you can easily identify cell types from bulk rna-seq so someone might think why bother with single-cell seq then. Obviously you can do other things with single cell like trajectory analysis but mentioning why cell type identification from bulk isn't perfect/not as good as single-cell cell type identification would be good I think.

Can you think of a sentence or two we could add to explain why? It could go at the end of Part 2?

stemangiola commented 4 years ago

Sure. This could be a good transition between cibersort and single cell

mblue9 commented 4 years ago

Yes was also thinking that too 😄