Open stemangiola opened 1 year ago
Could you provide a reproducible example of this issue?
Thanks.
Sure
devtools::install_github("stemangiola/tidybulk@dev")
library(tidybulk)
library(tidySummarizedExperiment)
tidybulk::se_mini |> select(days)
# Now we have days in the colData and days (covariate estimate) in the rowData
se = tidybulk::se_mini |> test_differential_abundance(~ days + (1 | condition), method = "glmmSeq_lme4", cores = 10)
# Here we see that .x and .y are added to days
se |> select(days.x, days.y)
# Here, it freaks out and just gives back rowData
se |> select(contains("days"))
Thanks! I'll try to fix the bug.
Thanks! I'll try to fix the bug.
Just to mention that this issue require a design proposal as the resolution of this behaviour requires some decisions and there are many ways to do it depending on the goals and priorities. :)
mutate_features
and mutate_samples
are one workaround here.
https://github.com/stemangiola/tidySummarizedExperiment/pull/94
Could you provide a reproducible example of this issue?
Thanks.