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stemangiola / tidybulk

Brings bulk and pseudobulk transcriptomics to the tidyverse
https://stemangiola.github.io/tidybulk/
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ERROR; return code from pthread_create() is 22 #145

Closed stemangiola closed 3 years ago

stemangiola commented 3 years ago

Hello @mblue9,

I tag you in case you have an idea of how to proceed.

For the pull request https://github.com/stemangiola/tidybulk/pull/139 we have this error

ERROR; return code from pthread_create() is 22

Due to the loading of preprocessCore for Cibersort, this happens only in github actions.

I found a possible solution from https://support.bioconductor.org/p/122925/

git clone https://github.com/bmbolstad/preprocessCore.git
cd preprocessCore/
R CMD INSTALL --configure-args="--disable-threading"  .

Do you know how to install preprocesscore with this procedure in github actions rather than the normal dependency manager?

mblue9 commented 3 years ago

That error was fixed here https://github.com/stemangiola/tidybulk/pull/150/commits