Allow different scaling methods with test_differential_abundance()

stemangiola / tidybulk

Brings bulk and pseudobulk transcriptomics to the tidyverse

https://stemangiola.github.io/tidybulk/

165 stars 25 forks source link

Allow different scaling methods with test_differential_abundance() #15

Closed bferan closed 4 years ago

bferan commented 4 years ago

Currently the method seems fixed to "TMM" in edgeR::calcNormFactors() in test_differential_abundance(). Allowing this to be changed like in scale_abundance() would be nice.

stemangiola commented 4 years ago

Done. This branch has it.

I have to test further and merge to dev branch

stemangiola commented 4 years ago

Merged to dev