stemangiola / tidybulk

Brings bulk and pseudobulk transcriptomics to the tidyverse
https://stemangiola.github.io/tidybulk/
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Add the method to simplify complete confounders is they are not factor of interest #301

Open stemangiola opened 9 months ago

stemangiola commented 9 months ago

Play the same strategy we have applied for the immune map paper to resolve two confounding factors that are not of interest.

simplify_design_matrix(suffix = "__simplified")

This function will take a summarised experiment or a table and return another consistent object with simplified columns so that the user will include in the model instead of the original ones.