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stemangiola
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tidybulk
Brings bulk and pseudobulk transcriptomics to the tidyverse
https://stemangiola.github.io/tidybulk/
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add ellipsis
#266
stemangiola
closed
1 year ago
0
Deprecate default de method
#265
stemangiola
opened
1 year ago
0
Design and contrasts for tidybulk test differential abundance function
#264
adityamahadevaniyer
closed
1 year ago
9
pathway analysis using tidybulk
#263
adityamahadevaniyer
opened
1 year ago
8
add messaging
#262
stemangiola
closed
1 year ago
0
ERROR; return code from pthread_create() is 22
#261
indapa
closed
1 year ago
3
Update check-bioc.yml
#260
mblue9
closed
1 year ago
1
github actions give preflight error for the whole tidy stack
#259
stemangiola
closed
1 year ago
1
Improve deconv docs
#258
stemangiola
closed
1 year ago
0
Stemangiola patch 1
#257
stemangiola
closed
1 year ago
0
Release 3 15
#256
stemangiola
closed
1 year ago
0
change message frequency
#255
stemangiola
closed
2 years ago
0
Fix image2
#254
mblue9
closed
2 years ago
0
"Proportion of variance explained" values on reduce_dimensions() output
#253
canholyavkin
closed
1 year ago
1
Dev
#252
stemangiola
closed
2 years ago
0
Fix image
#251
mblue9
closed
2 years ago
3
fixes
#250
stemangiola
closed
2 years ago
0
as_SE with multiple columns as input
#249
stemangiola
closed
2 years ago
0
error if there are NAs in the .transcript column
#248
stemangiola
closed
2 years ago
0
convert DelayedMatrix and fixed sample column name
#247
stemangiola
closed
2 years ago
0
improve docs for deconvolution
#246
stemangiola
closed
2 years ago
0
DEG Analysis Between Single Group with Multiple Groups
#245
canholyavkin
closed
2 years ago
6
implementation parallel cibersort
#244
stemangiola
closed
2 years ago
0
github action mac fail
#243
stemangiola
closed
2 years ago
1
Dev
#242
stemangiola
closed
2 years ago
0
deprecation untested
#241
stemangiola
closed
2 years ago
0
for SE save internals within the metadata rather than attributes.
#240
stemangiola
opened
2 years ago
0
deprecate .contrasts and update tests
#239
stemangiola
closed
2 years ago
0
avoid human annotation
#238
stemangiola
closed
2 years ago
0
implement new vocabulary
#237
stemangiola
closed
2 years ago
0
allow other feature column for SE
#236
stemangiola
closed
2 years ago
0
Polish aggregation tibble
#235
stemangiola
closed
2 years ago
0
Update github action to Bioc 3.15
#234
mblue9
closed
2 years ago
0
Dev
#233
stemangiola
closed
2 years ago
0
add argument for scaling if not scaled
#232
stemangiola
closed
2 years ago
0
Dev
#231
stemangiola
closed
2 years ago
0
For jian
#230
stemangiola
closed
2 years ago
0
Update actions to Bioc 3.14
#229
mblue9
closed
2 years ago
1
try fix
#228
stemangiola
closed
2 years ago
0
Dev
#227
stemangiola
closed
2 years ago
0
print message if reference is not defined by the user
#226
stemangiola
closed
2 years ago
0
Normalization method (scaling)
#225
ConYel
closed
2 years ago
9
Allow logFC shrinkage in DESeq
#224
antass
opened
2 years ago
4
Fix typo in DESeq raw result variable return
#223
antass
closed
2 years ago
2
pivot_sample and pivot_transcript convert .sample and .feature to sample and feature
#222
mblue9
closed
2 years ago
2
create_tt_from_bam_sam_bulk function recuires org.Hs database and is therefore incompatible with other organisms
#221
richardstoeckl
closed
2 years ago
2
Update NEWS.rd
#220
mblue9
closed
2 years ago
0
Add NEWS file
#219
mblue9
closed
2 years ago
1
Cibersort check 0 counts
#218
stemangiola
closed
2 years ago
0
Cibersort check 0 counts
#217
stemangiola
closed
2 years ago
0
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