Error: 'ggplot' is not an exported object from 'namespace:tidyseurat'

[denvercal1234GitHub]

Hi there,

I was trying to follow this tutorial (https://stemangiola.github.io/tidyseurat/), but I encountered the error "Error: 'ggplot' is not an exported object from 'namespace:tidyseurat'".

Would you mind advising me how to proceed?

Thank you.

> sessionInfo()
R version 4.3.1 (2023-06-16)
Platform: aarch64-apple-darwin20 (64-bit)
Running under: macOS Sonoma 14.1.1

Matrix products: default
BLAS:   /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib 
LAPACK: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRlapack.dylib;  LAPACK version 3.11.0

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

time zone: Europe/London
tzcode source: internal

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] ggplot2_3.4.4      tidyr_1.3.0        dplyr_1.1.4        tidyseurat_0.7.8   ttservice_0.4.0    reticulate_1.34.0  knitr_1.45        
[8] SeuratObject_5.0.1 sp_2.1-1          

loaded via a namespace (and not attached):
  [1] RColorBrewer_1.1-3     rstudioapi_0.15.0      jsonlite_1.8.7         magrittr_2.0.3         spatstat.utils_3.0-4  
  [6] fs_1.6.3               vctrs_0.6.4            ROCR_1.0-11            spatstat.explore_3.2-5 memoise_2.0.1         
 [11] rstatix_0.7.2          htmltools_0.5.7        usethis_2.2.2          curl_5.1.0             broom_1.0.5           
 [16] sctransform_0.4.1      parallelly_1.36.0      KernSmooth_2.23-22     htmlwidgets_1.6.2      ica_1.0-3             
 [21] plyr_1.8.9             plotly_4.10.3          zoo_1.8-12             cachem_1.0.8           igraph_1.5.1          
 [26] mime_0.12              lifecycle_1.0.4        pkgconfig_2.0.3        Matrix_1.6-3           R6_2.5.1              
 [31] fastmap_1.1.1          fitdistrplus_1.1-11    future_1.33.0          shiny_1.8.0            digest_0.6.33         
 [36] colorspace_2.1-0       patchwork_1.1.3        ps_1.7.5               tensor_1.5             Seurat_5.0.1          
 [41] RSpectra_0.16-1        irlba_2.3.5.1          pkgload_1.3.3          ggpubr_0.6.0           progressr_0.14.0      
 [46] spatstat.sparse_3.0-3  fansi_1.0.5            polyclip_1.10-6        httr_1.4.7             abind_1.4-5           
 [51] compiler_4.3.1         remotes_2.4.2.1        withr_2.5.2            backports_1.4.1        carData_3.0-5         
 [56] fastDummies_1.7.3      pkgbuild_1.4.2         ggsignif_0.6.4         MASS_7.3-60            sessioninfo_1.2.2     
 [61] tools_4.3.1            lmtest_0.9-40          httpuv_1.6.12          future.apply_1.11.0    goftest_1.2-3         
 [66] glue_1.6.2             callr_3.7.3            nlme_3.1-163           promises_1.2.1         grid_4.3.1            
 [71] Rtsne_0.16             cluster_2.1.4          reshape2_1.4.4         generics_0.1.3         spatstat.data_3.0-3   
 [76] gtable_0.3.4           data.table_1.14.8      car_3.1-2              utf8_1.2.4             spatstat.geom_3.2-7   
 [81] RcppAnnoy_0.0.21       ggrepel_0.9.4          RANN_2.6.1             pillar_1.9.0           stringr_1.5.1         
 [86] spam_2.10-0            RcppHNSW_0.5.0         later_1.3.1            splines_4.3.1          lattice_0.22-5        
 [91] deldir_1.0-9           survival_3.5-7         tidyselect_1.2.0       miniUI_0.1.1.1         pbapply_1.7-2         
 [96] randomcoloR_1.1.0.1    gridExtra_2.3          V8_4.4.0               scattermore_1.2        xfun_0.41             
[101] devtools_2.4.5         matrixStats_1.1.0      stringi_1.8.1          lazyeval_0.2.2         codetools_0.2-19      
[106] tibble_3.2.1           BiocManager_1.30.22    cli_3.6.1              uwot_0.1.16            xtable_1.8-4          
[111] munsell_0.5.0          processx_3.8.2         Rcpp_1.0.11            spatstat.random_3.2-1  globals_0.16.2        
[116] png_0.1-8              parallel_4.3.1         ellipsis_0.3.2         prettyunits_1.2.0      dotCall64_1.1-0       
[121] profvis_0.3.8          urlchecker_1.0.1       listenv_0.9.0          viridisLite_0.4.2      scales_1.2.1          
[126] ggridges_0.5.4         leiden_0.4.3.1         purrr_1.0.2            crayon_1.5.2           rlang_1.1.2           
[131] cowplot_1.1.1         

[denvercal1234GitHub]

Solved by restarting and reinstalling.

[stemangiola]

Now you don't need to do tidyseurat::ggplot anymore, Just ggplot. I will fix the vignette.