Question about Protein Surface

stemylonas / DeepSurf

A surface-based deep learning approach for the prediction of ligand binding sites on proteins

GNU Affero General Public License v3.0

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Question about Protein Surface #6

Closed smiles724 closed 2 years ago

smiles724 commented 2 years ago

Hi, nice work on the protein-ligand problem, and make this code public.

However, I cannot find the part corresponding to the generation of the protein surface. Can you please show me how to obtain the surface of any protein given its atomic coordinates?

Thanks

stemylonas commented 2 years ago

The surface is generated in 'protein.py, line 22' with the use of DMS software. You can download it from (https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/dms1.html)