Inappropriately colored connecting lines

[stenglein-lab]

A connecting line that connects nodes that seem like they should have a 0 S.F. distance are colored red.

This is evident in Watermelon-silver_mottle connecting line in this tree:

http://localhost:8000/?left=trees/Phlebovirus_L&right=trees/Phlebovirus_M#

[meekrob]

It is a string mismatch between similarly named pairs that we miss with visual inspection, but don't pass array.prototype.indexOf.

For PhleboVirus_L and _M, they are: Watermelon_silverottle_reference versus Watermelon_silver_mottle_reference Bajaru_sample_ versus Bajaru_sample and Severe_fever_with_thrombocytopenia_reference versus Severe_fever_with_thrombocytopenia_syndrome_reference

The underlying cophy-treetools doesn't implement the "best-match" method, which it should obviously be using here.

The package is https://www.npmjs.com/package/string-similarity and it is used to draw the bridging lines here https://github.com/stenglein-lab/TreeTangler/blob/6dc48fd04113efc8714927b11c070926d2f09498/lib/cophylogeny/src/cophylogeny-draw.js#L51

[meekrob]

This problem exposed an incorrect statement in the evaluation of d_foot that happened to work in ideal, matched leaf names. The revision is https://github.com/meekrob/cophy-treetools/blob/29a34489f7e6c17a241c3f17d69573be8f8c414b/functions/detangler.js#L52