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stephaneguindon / phyml

PhyML -- Phylogenetic estimation using (Maximum) Likelihood
GNU General Public License v3.0
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phyml not finding a tree if option selected for random starting tree #121

Open leonperrie opened 4 years ago

leonperrie commented 4 years ago

Hello, The results email is saying "Unexpected error: no inferred tree result file. Execution time: 0 minute(s)" when the option is selected for a random starting tree. When that option is not selected, the input file processes fine, producing a result. I have tried this several times (including with an input file that worked previously), but if it helps, one of the jobs that didn't work was JobID 2307089. Thank you, Leon

stephaneguindon commented 4 years ago

Please let me know which version of PhyML you are using here and what the command-line options are as well.

leonperrie commented 4 years ago

Hi Stephane,

I used the websitehttp://www.atgc-montpellier.fr/phyml/. Settings were:

Data type = DNA Substitution Model = Automatic, with Selection Criterion =AIC Starting tree = BIONJ Type of tree improvement = SPR Number of random starting tree = 10 (yes)

Fast likelihood-based method = no Perform bootstrap = yes.

The input file is available herehttps://drive.google.com/open?id=1msppIp4C3v0wsWGS47Ad_P9t9kSDMa_g in case it is useful. It seems to work file, except when using random starting trees.

Thank you, Leon

From: Stephane Guindon [mailto:notifications@github.com] Sent: Tuesday, 11 February 2020 9:53 PM To: stephaneguindon/phyml phyml@noreply.github.com Cc: Leon Perrie LeonP@tepapa.govt.nz; Author author@noreply.github.com Subject: Re: [stephaneguindon/phyml] phyml not finding a tree if option selected for random starting tree (#121)

Please let me know which version of PhyML you are using here and what the command-line options are as well.

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