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stephens999 / ashr

An R package for adaptive shrinkage
GNU General Public License v3.0
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mixsqp can return negative mixture proportions #101

Closed willwerscheid closed 4 years ago

willwerscheid commented 5 years ago

See here: https://github.com/stephenslab/mixsqp/issues/25

If mixsqp is going to allow this then we should threshold out zeros in ashr.

pcarbo commented 5 years ago

@willwerscheid It isn't in my immediate plan to resolve that issue, so yes, you should probably add steps in ashr to correct for this.