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stephenshank / the_observable_galaxy

Integrating the ObservableHQ notebook platform with the Galaxy project
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Transcriptomics #4

Open stephenshank opened 1 year ago

stephenshank commented 1 year ago

Integrate data and workflows from the Galaxy reference based transcriptomics training with the cluster heatmap.

Partial progress here: https://observablehq.com/@stephenshank/transcriptomics-dabbling?payload_id=4b7809e331eb290b&base_url=galaxy.hyphy.org

@Hannahkimincompbio has a history where the above has been ran.

stephenshank commented 1 year ago

Starting data: https://usegalaxy.org/u/stephenshank/h/drosophila-training-dataset

stephenshank commented 1 year ago

Todo for @stephenshank: either RNA-star data manager for Drosophila on galaxy.hyphy.org, or Observable Galaxy on a main instance

stephenshank commented 1 year ago

@jzehr Can you please add a URL to your history with data that is ready to go right into the workflow?

jzehr commented 1 year ago

These URLs will work on Galaxy Main

History: https://usegalaxy.org/u/jordanzehr/h/fccc-rnaseq-tutorial-data WF: https://usegalaxy.org/u/jordanzehr/w/bulk-pe-rna-seq-workflow-imported-from-uploaded-file