Intra-host viz: to ingest VCFs and visualize ordered AFs

[stephenshank]

Current workflow: https://galaxy.hyphy.org/u/stephenshank/w/copy-of-covid-19-variation-analysis-on-wgs-pe-data-imported-from-uploaded-file

Latest workflow: https://galaxyproject.org/projects/covid19/workflows/

A history with some data: https://galaxy.hyphy.org/u/stephenshank/h/sc2-variant-calling

Some links to viz:

• https://observablehq.com/@stephenshank/exploring-sars-cov-2-intrahost-variation-descriptive?payload_id=3cedd49a3055ec76&base_url=galaxy.hyphy.org
• https://observablehq.com/@stephenshank/exploring-sars-cov-2-intrahost-variation-individual-sampl?payload_id=e52329b6f73d5c85&base_url=galaxy.hyphy.org
• https://observablehq.com/@stephenshank/viral-intrahost-variation?payload_id=6691452867ee7b5c&base_url=galaxy.hyphy.org