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stephenshank / the_observable_galaxy

Integrating the ObservableHQ notebook platform with the Galaxy project
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SC2 Illumina Variant calling #7

Open jzehr opened 1 year ago

jzehr commented 1 year ago

Here is the history for the illumina SC2 variant call pipeline that includes a realign and no realign step (outputs 4 VCFs, 2 for ivar and 2 for lofreq)

https://galaxy.hyphy.org/u/jzehr/h/variant-call-update-realignnorealign

stephenshank commented 1 year ago

Triangle: https://observablehq.com/@stephenshank/machine-learning-on-sars-cov-2-intrahost-datasets