Closed nikofleischer closed 1 year ago
Thanks. Yes indeed the vignettes need to be updated since several major changes have been making to the interface. I unfortunately won't be able to address this immediately but I will leave this Issue open as a reminder.
In the vignette, the function
diff_count_clusters
anddiff_count_analysis
are called to calculate differences in gene contribution to the topics. these don't exist in the package anymore.After some confusion I deducted that
de_analysis()
is the correct function name now, might be good to update.Best and thanks for the great package, Niko
EDIT: there are more changes, I will update everything I find here :)
1) parameters for
volcano_plot
changed.label_above_quantile
replaced bydo.quantile