stephenslab / fastTopics

Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.
https://stephenslab.github.io/fastTopics
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function error-diff_count_clusters() & diff_count_analysis() #31

Closed geng-lee closed 2 years ago

geng-lee commented 2 years ago

Hi,

Can the structure_plot function be displayed with a weight? Too many color blocks make me unable to distinguish their characteristics.

Second, I loaded FastTopics, but I couldn't use the function. I received the following error:

library(fastTopics)

dfc_out <- diff_count_clusters(samples$group,counts)
Error in diff_count_clusters(samples$group, counts) :
  没有"diff_count_clusters"这个函数
dfa_out <- diff_count_analysis(fit_k,counts)
Error in diff_count_analysis(fit_k, counts) :
  没有"diff_count_analysis"这个函数

Thanks!

Best, Jamie

pcarbo commented 2 years ago

@geng-lee Please use de_analysis instead. (Apologies the vignettes need to be updated.)

geng-lee commented 2 years ago

OK,Thanks!😁