stephenslab / fastTopics

Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.
https://stephenslab.github.io/fastTopics
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diff_count_clusters not found #32

Closed NicoloPecco closed 1 year ago

NicoloPecco commented 1 year ago

Hi!

R cannot find the diff_count_clusters functions. It gives me this error: 'could not find function "diff_count_clusters'.

Do you know why?

Thanks in advance,

Nicolo

pcarbo commented 1 year ago

Hi @NicoloPecco thanks for your interest in fastTopics. This function has been removed; please use de_analysis instead. (Sorry, the vignettes have not been updated accordingly.)

NicoloPecco commented 1 year ago

Thanks!

dfa_out <- de_analysis(fit,counts) works. Can you please provide the last part of the vignettes for the usage with the de_analysis function?

Thanks,

Nicolo

pcarbo commented 1 year ago

Yes, I need to update the vignnette. I'll leave this ticket open as a reminder to do this.

NicoloPecco commented 1 year ago

Hi, this is just a new reminder 🙏😅

Thank you,

Nicolo

pcarbo commented 1 year ago

Thanks for the reminder, Nicolo. It is near the top of my to-do list.

pcarbo commented 1 year ago

@NicoloPecco I've updated the vignettes finally. I apologize for the long delay.