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stephenslab / mashr

An R package for multivariate adaptive shrinkage.
https://stephenslab.github.io/mashr
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SFA R package #10

Closed gaow closed 6 years ago

gaow commented 7 years ago

Related to #9 : it might be straightforward to natively support SFA the similar way we've done it for extreme_decov, ie, make an sfar package out of it, unless licensing is an issue.

stephens999 commented 7 years ago

it could be interesting. However, I hope we might make flashr our default approach here instead of SFA. Only downside is that flashr is currently potentially slower? (haven't checked carefully but seems inevitable). flashr has the advantage of being more accurate, also already in R, and I am hopeful we can speed it up.

gaow commented 6 years ago

Related to #17 :

At the very least the procedure to run SFA is demonstrated here with output saved as RDS file, and using the results in mashr is demonstrated here.

gaow commented 6 years ago

We will use flashr to replace SFA.