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stephenslab / mashr

An R package for multivariate adaptive shrinkage.
https://stephenslab.github.io/mashr
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EZ model #25

Closed gaow closed 7 years ago

gaow commented 7 years ago

As discussed, I

  1. added df and pval to set_mash_data interface
  2. added alpha to mash and make default alpha = 0 for EZ model

@pcarbo would you kindly review and merge? I'm yet to test on real data analysis but the relevant unittests all pass

stephens999 commented 7 years ago

did the unit tests include comparisons with ash with alpha neq 0? should check posterior mean and sd agree and also log-likelihood calculations