Closed Young-Sook closed 4 years ago
Thanks for catching the bug. We ignored a case in cov_ed. Please update the package.
Thanks for the quick response. I just reinstalled mashr with the following command, but I still have the same error.
devtools::install_github("stephenslab/mashr")
The fixed script was not updated in the package somehow?
sorry, please try again.
It now works! Thanks a lot!
Hi, I am having another issue with running mashr. I am using common control. When I use 'cov_ed' function (U.ed = cov_ed(data.strong, U.pca)), I have a warning message below.
I think the warning message occurs because data$V is a 5 by 5 matrix while data$Shat[i, ] has 4 columns. I am assuming this is a bug that happens due to not controlling for the common control case? This is my script.
This error message doesn't stop running mashr but I am wondering if this can affect results. Thanks a lot!