search

stephenslab / rssr

Regression with summary statistics (RSS) package for R.
10 stars 2 forks source link

installation failed #2

Closed stephens999 closed 7 years ago

stephens999 commented 7 years ago

I get ERROR: dependency ‘h5’ is not available for package ‘rssr’ devtools::install_github("stephenslab/rssr",ref="v0.1.0-alpha")

Downloading GitHub repo stephenslab/rssr@v0.1.0-alpha from URL https://api.github.com/repos/stephenslab/rssr/zipball/v0.1.0-alpha Installing rssr trying URL 'https://cran.rstudio.com/bin/macosx/mavericks/contrib/3.3/future_1.3.0.tgz' Content type 'application/x-gzip' length 267478 bytes (261 KB)

downloaded 261 KB

Installing future trying URL 'https://cran.rstudio.com/bin/macosx/mavericks/contrib/3.3/globals_0.8.0.tgz' Content type 'application/x-gzip' length 45161 bytes (44 KB)

downloaded 44 KB

Installing globals '/Library/Frameworks/R.framework/Resources/bin/R' --no-site-file --no-environ --no-save --no-restore \ --quiet CMD INSTALL \ '/private/var/folders/1f/d96lz9ts15g81dqs_hcc_9cr0000gq/T/RtmpPSRiIa/devtoolsa3056ffff534/globals' \ --library='/Users/stephens/Dropbox/Rpackages' --install-tests

Installing listenv '/Library/Frameworks/R.framework/Resources/bin/R' --no-site-file --no-environ --no-save --no-restore \ --quiet CMD INSTALL \ '/private/var/folders/1f/d96lz9ts15g81dqs_hcc_9cr0000gq/T/RtmpPSRiIa/devtoolsa305582782a/listenv' \ --library='/Users/stephens/Dropbox/Rpackages' --install-tests

Installing future.BatchJobs trying URL 'https://cran.rstudio.com/bin/macosx/mavericks/contrib/3.3/BatchJobs_1.6.tgz' Content type 'application/x-gzip' length 419995 bytes (410 KB)

downloaded 410 KB

Installing BatchJobs trying URL 'https://cran.rstudio.com/bin/macosx/mavericks/contrib/3.3/fail_1.3.tgz' Content type 'application/x-gzip' length 39466 bytes (38 KB)

downloaded 38 KB

Installing fail '/Library/Frameworks/R.framework/Resources/bin/R' --no-site-file --no-environ --no-save --no-restore \ --quiet CMD INSTALL \ '/private/var/folders/1f/d96lz9ts15g81dqs_hcc_9cr0000gq/T/RtmpPSRiIa/devtoolsa30514d14973/fail' \ --library='/Users/stephens/Dropbox/Rpackages' --install-tests

Installing sendmailR '/Library/Frameworks/R.framework/Resources/bin/R' --no-site-file --no-environ --no-save --no-restore \ --quiet CMD INSTALL \ '/private/var/folders/1f/d96lz9ts15g81dqs_hcc_9cr0000gq/T/RtmpPSRiIa/devtoolsa30573b05ce4/sendmailR' \ --library='/Users/stephens/Dropbox/Rpackages' --install-tests

Installing R.utils trying URL 'https://cran.rstudio.com/bin/macosx/mavericks/contrib/3.3/R.methodsS3_1.7.1.tgz' Content type 'application/x-gzip' length 55551 bytes (54 KB)

downloaded 54 KB

Installing R.methodsS3 '/Library/Frameworks/R.framework/Resources/bin/R' --no-site-file --no-environ --no-save --no-restore \ --quiet CMD INSTALL \ '/private/var/folders/1f/d96lz9ts15g81dqs_hcc_9cr0000gq/T/RtmpPSRiIa/devtoolsa305478f8073/R.methodsS3' \ --library='/Users/stephens/Dropbox/Rpackages' --install-tests

Installing R.oo '/Library/Frameworks/R.framework/Resources/bin/R' --no-site-file --no-environ --no-save --no-restore \ --quiet CMD INSTALL \ '/private/var/folders/1f/d96lz9ts15g81dqs_hcc_9cr0000gq/T/RtmpPSRiIa/devtoolsa3053b38759d/R.oo' \ --library='/Users/stephens/Dropbox/Rpackages' --install-tests

Installing RcppParallel '/Library/Frameworks/R.framework/Resources/bin/R' --no-site-file --no-environ --no-save --no-restore \ --quiet CMD INSTALL \ '/private/var/folders/1f/d96lz9ts15g81dqs_hcc_9cr0000gq/T/RtmpPSRiIa/devtoolsa30541db80fb/RcppParallel' \ --library='/Users/stephens/Dropbox/Rpackages' --install-tests

ERROR: dependency ‘h5’ is not available for package ‘rssr’

xiangzhu commented 7 years ago

@stephens999 do you have package h5 installed? https://cran.r-project.org/web/packages/h5/index.html

ERROR: dependency ‘h5’ is not available for package ‘rssr’

stephens999 commented 7 years ago

it works after i installed h5 (which required brew install homebrew/science/hdf5 --enable-cxx)

stephens999 commented 7 years ago

should maybe give the user a heads up in the readme if this package needs manually installing

CreRecombinase commented 7 years ago

Package shouldn't require manual installation now that HDF5 is no longer a dependency #5