Closed ZayedShahjahan373 closed 3 years ago
@ZayedShahjahan373 yes those are indices of variables. You can configure it to match the genomic coordinate using pos
. See ?susie_plot
for details. But the function cannot label x-axis with rsID or any non-integer labels.
Thank you Dr. Wang. Much appreciated.
Hi,
I hope you are all doing well. I am working on a genetic fine-mapping project with simulated data and so far the susie function has performed as expected. I do have a question about the variable names returned by the 'sets' accessor. 'susie.mod$sets' returns a set of numbers that do not correspond to any of my variables in the matrix of SNVs; which are all labelled in this 'rsXXXX' style. Am I correct interpreting these numbers in the confidence set as the index positions of the columns in the SNV matrix?
Thank you, Zayed Shahjahan