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stephenslab / susieR

R package for "sum of single effects" regression.
https://stephenslab.github.io/susieR
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Input data for eQTL fine-mapping by summary data #161

Open tianwen0003 opened 2 years ago

tianwen0003 commented 2 years ago

Hi I have got an eQTL summury resutls from fastqtl (I have in sample LD matrix, variance of penotype Y) and want to do a fine-mapping task in furthur, I want to know

  1. whether the "slope" and "slope se" in the fastqtl result is equivalent to the "bhat" and "shat" options in the function "susie_rss", respectively?
gaow commented 2 years ago

whether the "slope" and "slope se" in the fastqtl result is equivalent to the "bhat" and "shat" options in the function "susie_rss", respectively?

yes