Suggestively associated region with lots of highly correlated variants

stephenslab / susieR

R package for "sum of single effects" regression.

https://stephenslab.github.io/susieR

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Suggestively associated region with lots of highly correlated variants #170

Open katherinef opened 2 years ago

katherinef commented 2 years ago

Hello,

I have a GWAS locus with many highly correlated SNPs showing suggestive significance. When I run Susie on the region, I get the following plot, and no credible sets. I wondered if you could advise me whether it is worth playing with the coverage?

Many thanks!

susie_plot