Genotype-by-environment interaction?

stephenslab / susieR

R package for "sum of single effects" regression.

https://stephenslab.github.io/susieR

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Genotype-by-environment interaction? #193

Open Huifang-Xu opened 1 year ago

Huifang-Xu commented 1 year ago

Hi there,

I would like to know if SuSiE applies to fine-mapping the locus with genotype-by-environment (GxE) interaction effects. For example, if an SNP/locus with a significant GxE effect, can I use the GxE beta and the corresponding P-value to do the fine-mapping?

Many thanks, Huifang

pcarbo commented 1 year ago

@Huifang-Xu See Issue #187 for a related discussion, and this mvsusieR Issue for more related discussion.